PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617657.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 458aa    MW: 50977.1 Da    PI: 9.4057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-066890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F+r  nL+ H r H
  XP_013617657.1 68 FICEVCNKGFKRDQNLQLHRRGH 90
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-86790No hitNo description
Gene3DG3DSA:3.30.160.603.5E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0136890IPR015880Zinc finger, C2H2-like
PfamPF121712.0E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8876890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355140110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.03E-8140165No hitNo description
SMARTSM00355200145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MMIPDDHHHL SFPSYVLHQE QITPNLNPNP NPTSSNSNKR KRNLPGNPDP DAEVIALSPN  60
SLMATNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEQVKKKVY ICPEKACVHH  120
DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAEES SRFASVPPAA TAAPFLNNSP DAEVNHGNVK LNHQQPGINI  240
NRHNINGFMG QAFANQVSLP ANVFASSSLP SPHSESDSLQ NLWHLQGQSS HQWLLNENNN  300
RNILQRGISN NQEDQDTKKG IITSDYLFSS DSSTNYDQSG GQVIPSMSAT ALLQKAAQMG  360
SKRSESSSNN STAVGLMTSS IFNNKHTEND IKTKEVDERG FTRDFLGVGS QNRPWPLLMV  420
NHSLPNMTQP ATTDVIPTTG TATAGTATAE MNHKTQTM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283020.0AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds.
GenBankAJ6214930.0AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene).
GenBankAY1439360.0AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617657.10.0PREDICTED: protein indeterminate-domain 9-like
RefseqXP_013672577.10.0PREDICTED: protein indeterminate-domain 9-like isoform X1
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A0D3A8N00.0A0A0D3A8N0_BRAOL; Uncharacterized protein
STRINGBra033840.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein